Biochemistry /Biology 101 - Biochemical Basics Part 5

Biology 101 - Biochemical Basics Part 5

Biochemistry10 CardsCreated 28 days ago

This deck covers key concepts related to enzyme function, substrate specificity, and biochemical molecules such as ATP, focusing on definitions and models of enzyme activity.

Define: substrate

A specific molecule that an enzyme acts upon, usually via interactions with the enzyme's active site. For example, starch is the substrate of salivary amylase. This means that amylase, an enzyme, catalyzes a reaction involving starch as a reactant.

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Key Terms

Term
Definition

Define: substrate

A specific molecule that an enzyme acts upon, usually via interactions with the enzyme's active site. For example, starch is the substrate of saliv...

What is the functional significance of the active site?

It is the structural component where enzyme-substrate interactions take place. In other words, the active site is the catalytic region of an enzyme...

How does the lock-and-key model explain enzyme-substrate specificity?

It posits that a substrate will fit perfectly into the active site of its corresponding enzyme, without any conformational changes taking place. In...

How does the induced fit model explain enzyme-substrate specificity?

It posits that active sites are flexible. When a substrate approaches the enzyme, the conformation of the active site will change to better fit the...

Define: allosteric site

A region of an enzyme, separate from the active site, where molecules can bind and affect enzyme function. Allosteric binding can either facilitate...

How does a competitive inhibitor alter an enzyme-catalyzed reaction?

It binds to an enzyme on its active site, inhibiting the reaction. Specifically, these inhibitors compete with the substrate and block it from bind...

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TermDefinition

Define: substrate

A specific molecule that an enzyme acts upon, usually via interactions with the enzyme's active site. For example, starch is the substrate of salivary amylase. This means that amylase, an enzyme, catalyzes a reaction involving starch as a reactant.

What is the functional significance of the active site?

It is the structural component where enzyme-substrate interactions take place. In other words, the active site is the catalytic region of an enzyme. It is structured to facilitate the binding of its substrate, often through the presence of certain amino acid residues.

How does the lock-and-key model explain enzyme-substrate specificity?

It posits that a substrate will fit perfectly into the active site of its corresponding enzyme, without any conformational changes taking place. In this model, the active site is the 'lock' and its complementary substrate is the 'key.'

How does the induced fit model explain enzyme-substrate specificity?

It posits that active sites are flexible. When a substrate approaches the enzyme, the conformation of the active site will change to better fit the substrate. The induced fit model is a more recent adaptation of the lock-and-key model.

Define: allosteric site

A region of an enzyme, separate from the active site, where molecules can bind and affect enzyme function. Allosteric binding can either facilitate or inhibit the binding of substrate to the active site.

How does a competitive inhibitor alter an enzyme-catalyzed reaction?

It binds to an enzyme on its active site, inhibiting the reaction. Specifically, these inhibitors compete with the substrate and block it from binding the active site.

How does a noncompetitive inhibitor alter an enzyme-catalyzed reaction?

It binds to an enzyme on a region outside of its active site, inhibiting the reaction. Specifically, these inhibitors bind an allosteric site, inducing a structural change in the enzyme that decreases its efficiency. Substrates can still enter the enzyme's active site.

What class of substrate is common to maltase, sucrase and lactase?

Disaccharides. Maltase breaks down maltose into two glucose molecules. Sucrase cleaves sucrose into glucose and fructose, and lactase breaks down lactose into glucose and galactose.

What molecule is shown below, and what is its biological role?

This molecule is adenosine triphosphate (ATP), the major form of cellular energy. ATP consists of three phosphate groups bound to the ribonucleoside adenosine. The cleavage of the third phosphate bond facilitates the release of energy, which the cell harnesses to drive biological processes.

What name is given to the bonds circled in the structure below?

Phosphoanhydride bonds. These phosphoanhydride bonds exist between phosphate groups on molecules like ATP (shown) and ADP. The name of these bonds comes from the reaction that forms them: dehydration (removal of H2O). Predictably, they can be broken by the reverse reaction, hydrolysis (addition of H2O).